Step-by-step lessons for AMA27, each short enough to finish in one sitting. The visualization lessons run their program in a browser session on a compute node, through Open OnDemand.
Note
Cluster details. Highlighted values are placeholders. AMA27's queue names, module versions, paths and addresses go in when the cluster is deployed.
Before your first lesson
- Start an OnDemand session. Every lesson that opens a program in your browser begins with one.
- Get your data where the app can see it, when you want to work on your own files. The lessons below open data that comes with their program, so you can leave this until you need it.
By program
Each program has a page listing its lessons by what they show. Start with that program's starter lesson, which opens data, moves around it, colors it and saves a picture. The rest each do one thing.
| Program | Start with | Then |
|---|---|---|
| ParaView | Start ParaView on OnDemand | Streamlines, orbitals and electron density |
Lessons for ChimeraX, PyMOL, GaussView, IGV, MATLAB, JupyterLab and RStudio are being written.
Topics
A topic page compares the programs that can do one lesson:
Paths
A path puts lessons in order for one kind of work:
- Flow and transport: from your first session to streamlines through a simulated flow.